SOFTWARE

Some of the links below require authentication. Please contact us for passwords.

 

 

Online programs

Modular structures of transcription programs:
Interactive visualization.

> S. cerevisiae + explanations of the interface
> A. thaliana
> E. coli
> D. melanogaster
> H. sapiens (157 conditions)
> H. sapiens (1474 conditions)

 

 

Gene Hopping:
Sequence and expression comparison between several organisms.

> Interactive web GUI

 

 

Signature Algorithm:
cis-regulatory sequence testing and pathway analysis

> Online implementation (S. cerevisiae)

 

 

Software for download

Iterative Signature Algorithm (ISA):
Analysis of large-scale gene expression data

> Matlab program package

 

 

Signature Algorithm:
cis-regulatory sequence testing and pathway analysis

> Standalone programs (Windows PC, S. cerevisiae)

> Matlab GUI: S. cerevisiae
> Matlab GUI: A. thaliana
> Matlab GUI: E. coli
> Matlab GUI: D. melanogaster
> Matlab GUI: H. sapiens

 

 

Data for download

Expression data:
Raw log2 ratios, gene list and & condition list

> Matlab variables: S. cerevisiae
> Matlab variables: A. thaliana
> Matlab variables: E. coli
> Matlab variables: D. melanogaster
> Matlab variables: C. elegans
> Matlab variables: H. sapiens

> HeatShock yeast comparative

Time lapse microscopy

Time lapse microscopy movies for Vardi and Levy et al.

YFP reporter driven by Pho84 promotor. Dynamics of transitions from intermediate to rich phosphate media (1-4) and from rich to no-phosphate media (5-6).

 

 

movie 1: transfer of committed cells from intermediate to rich media

movie 2: transfer of committed cells from intermediate to rich media

movie 3: transfer of committed cells from intermediate to rich media

movie 4: transfer of committed cells from intermediate to rich media

movie 5: transfer of cells from rich to no phospate media

 

movie 6: transfer of cells from rich to no phospate media